WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R07E4.1a.1 Sequence Name  R07E4.1a.1
Length (nt)  3740   Chromosome Location  X: 5959115-5970273
Chromosome . Primary Identifier  X Chromosome Location . Start  5959115
Chromosome Location . End  5970273 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07E4.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019935 R07E4.1 R07E4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R07E4.1a R07E4.1a 3405   X: 5959115-5959236

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:R07E4.1a.1 5959115 5970273 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon235325   122   X: 5959115-5959236 Caenorhabditis elegans
Exon235327   90   X: 5961222-5961311 Caenorhabditis elegans
Exon235329   71   X: 5961425-5961495 Caenorhabditis elegans
Exon235332   151   X: 5963387-5963537 Caenorhabditis elegans
Exon235334   38   X: 5963933-5963970 Caenorhabditis elegans
Exon235337   111   X: 5964766-5964876 Caenorhabditis elegans
Exon235340   204   X: 5965608-5965811 Caenorhabditis elegans
Exon235343   95   X: 5965869-5965963 Caenorhabditis elegans
Exon235346   190   X: 5966385-5966574 Caenorhabditis elegans
Exon235349   189   X: 5966641-5966829 Caenorhabditis elegans
Exon235352   108   X: 5966875-5966982 Caenorhabditis elegans
Exon235355   91   X: 5967038-5967128 Caenorhabditis elegans
Exon235358   210   X: 5967172-5967381 Caenorhabditis elegans
Exon235361   285   X: 5967583-5967867 Caenorhabditis elegans
Exon235364   145   X: 5967910-5968054 Caenorhabditis elegans
Exon235367   180   X: 5968123-5968302 Caenorhabditis elegans
Exon235370   115   X: 5968348-5968462 Caenorhabditis elegans
Exon235373   164   X: 5968509-5968672 Caenorhabditis elegans
Exon235376   77   X: 5968724-5968800 Caenorhabditis elegans
Exon235379   297   X: 5968854-5969150 Caenorhabditis elegans
Exon235382   232   X: 5969427-5969658 Caenorhabditis elegans
Exon235387   575   X: 5969699-5970273 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:R07E4.1a.1 5959115 5970273 1

1 Sequence

Length
3740

1 Sequence Ontology Term

Identifier Name Description
transcript