WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R07E4.1b.2 Sequence Name  R07E4.1b.2
Length (nt)  3371   Chromosome Location  X: 5963386-5970186
Chromosome . Primary Identifier  X Chromosome Location . Start  5963386
Chromosome Location . End  5970186 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07E4.1b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019935 R07E4.1 R07E4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R07E4.1b R07E4.1b 3108   X: 5963401-5963537

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:R07E4.1b.2 5963386 5970186 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon235331   152   X: 5963386-5963537 Caenorhabditis elegans
Exon235336   38   X: 5963933-5963970 Caenorhabditis elegans
Exon235339   111   X: 5964766-5964876 Caenorhabditis elegans
Exon235342   204   X: 5965608-5965811 Caenorhabditis elegans
Exon235345   95   X: 5965869-5965963 Caenorhabditis elegans
Exon235348   190   X: 5966385-5966574 Caenorhabditis elegans
Exon235351   189   X: 5966641-5966829 Caenorhabditis elegans
Exon235354   108   X: 5966875-5966982 Caenorhabditis elegans
Exon235357   91   X: 5967038-5967128 Caenorhabditis elegans
Exon235360   210   X: 5967172-5967381 Caenorhabditis elegans
Exon235363   285   X: 5967583-5967867 Caenorhabditis elegans
Exon235366   145   X: 5967910-5968054 Caenorhabditis elegans
Exon235369   180   X: 5968123-5968302 Caenorhabditis elegans
Exon235372   115   X: 5968348-5968462 Caenorhabditis elegans
Exon235375   164   X: 5968509-5968672 Caenorhabditis elegans
Exon235378   77   X: 5968724-5968800 Caenorhabditis elegans
Exon235381   297   X: 5968854-5969150 Caenorhabditis elegans
Exon235384   232   X: 5969427-5969658 Caenorhabditis elegans
Exon235385   488   X: 5969699-5970186 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:R07E4.1b.2 5963386 5970186 1

1 Sequence

Length
3371

1 Sequence Ontology Term

Identifier Name Description
transcript