WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F22F4.1.1 Sequence Name  F22F4.1.1
Length (nt)  2287   Chromosome Location  X: 6004153-6007096
Chromosome . Primary Identifier  X Chromosome Location . Start  6004153
Chromosome Location . End  6007096 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F22F4.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017716 sups-1 F22F4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F22F4.1 F22F4.1 1671   X: 6004630-6004720

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F22F4.1.1 6004153 6007096 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon235446   568   X: 6004153-6004720 Caenorhabditis elegans
Exon235448   174   X: 6004768-6004941 Caenorhabditis elegans
Exon235449   119   X: 6005123-6005241 Caenorhabditis elegans
Exon235450   285   X: 6005286-6005570 Caenorhabditis elegans
Exon235451   132   X: 6005622-6005753 Caenorhabditis elegans
Exon235452   55   X: 6005801-6005855 Caenorhabditis elegans
Exon235453   205   X: 6005909-6006113 Caenorhabditis elegans
Exon235454   313   X: 6006166-6006478 Caenorhabditis elegans
Exon235455   67   X: 6006526-6006592 Caenorhabditis elegans
Exon235456   85   X: 6006634-6006718 Caenorhabditis elegans
Exon235457   79   X: 6006764-6006842 Caenorhabditis elegans
Exon235458   205   X: 6006892-6007096 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F22F4.1.1 6004153 6007096 1

1 Sequence

Length
2287

1 Sequence Ontology Term

Identifier Name Description
transcript