WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09B8.7a.1 Sequence Name  C09B8.7a.1
Length (nt)  2314   Chromosome Location  X: 6044309-6048608
Chromosome . Primary Identifier  X Chromosome Location . Start  6044309
Chromosome Location . End  6048608 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09B8.7a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003911 pak-1 C09B8.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09B8.7a C09B8.7a 1719   X: 6044894-6045052

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09B8.7a.1 6044309 6048608 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon235532   744   X: 6044309-6045052 Caenorhabditis elegans
Exon235534   72   X: 6045210-6045281 Caenorhabditis elegans
Exon235537   123   X: 6045894-6046016 Caenorhabditis elegans
Exon235540   74   X: 6046071-6046144 Caenorhabditis elegans
Exon235543   568   X: 6046195-6046762 Caenorhabditis elegans
Exon235547   93   X: 6047029-6047121 Caenorhabditis elegans
Exon235552   215   X: 6047166-6047380 Caenorhabditis elegans
Exon235553   148   X: 6047429-6047576 Caenorhabditis elegans
Exon235556   107   X: 6048125-6048231 Caenorhabditis elegans
Exon235560   79   X: 6048280-6048358 Caenorhabditis elegans
Exon235563   91   X: 6048518-6048608 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09B8.7a.1 6044309 6048608 -1

1 Sequence

Length
2314

1 Sequence Ontology Term

Identifier Name Description
transcript