WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C09B8.7b Sequence Name  C09B8.7b
Length (nt)  1710   Chromosome Location  X: 6044894-6045052
Chromosome . Primary Identifier  X Chromosome Location . Start  6044894
Chromosome Location . End  6045052
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09B8.7b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE06792 PAK-1, isoform b 63.5 569 Caenorhabditis elegans
 

Other

16 RNAi

WormBase ID
WBRNAi00083108
WBRNAi00102023
WBRNAi00102019
WBRNAi00102025
WBRNAi00102027
WBRNAi00102026
WBRNAi00040162
WBRNAi00028710
WBRNAi00109205
WBRNAi00109400
WBRNAi00109303
WBRNAi00109594
WBRNAi00109497
WBRNAi00116140
WBRNAi00010509
WBRNAi00083096

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C09B8.7b 6044894 6045052 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003911 pak-1 C09B8.7 Caenorhabditis elegans

11 Locations


Feature . Primary Identifier
Start End Strand
CDS:C09B8.7b 6044894 6045052 -1
CDS:C09B8.7b 6045210 6045281 -1
CDS:C09B8.7b 6045894 6046016 -1
CDS:C09B8.7b 6046071 6046144 -1
CDS:C09B8.7b 6046195 6046762 -1
CDS:C09B8.7b 6047029 6047121 -1
CDS:C09B8.7b 6047166 6047371 -1
CDS:C09B8.7b 6047429 6047576 -1
CDS:C09B8.7b 6048125 6048231 -1
CDS:C09B8.7b 6048280 6048358 -1
CDS:C09B8.7b 6048518 6048598 -1

1 Sequence

Length
1710

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C09B8.7b.1 C09B8.7b.1 2304   X: 6044308-6048606