WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09B8.7c.1 Sequence Name  C09B8.7c.1
Length (nt)  1572   Chromosome Location  X: 6044894-6048301
Chromosome . Primary Identifier  X Chromosome Location . Start  6044894
Chromosome Location . End  6048301 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09B8.7c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003911 pak-1 C09B8.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09B8.7c C09B8.7c 1572   X: 6044894-6045052

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09B8.7c.1 6044894 6048301 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon235533   159   X: 6044894-6045052 Caenorhabditis elegans
Exon235536   72   X: 6045210-6045281 Caenorhabditis elegans
Exon235539   123   X: 6045894-6046016 Caenorhabditis elegans
Exon235542   74   X: 6046071-6046144 Caenorhabditis elegans
Exon235545   568   X: 6046195-6046762 Caenorhabditis elegans
Exon235549   93   X: 6047029-6047121 Caenorhabditis elegans
Exon235551   206   X: 6047166-6047371 Caenorhabditis elegans
Exon235555   148   X: 6047429-6047576 Caenorhabditis elegans
Exon235558   107   X: 6048125-6048231 Caenorhabditis elegans
Exon235559   22   X: 6048280-6048301 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09B8.7c.1 6044894 6048301 -1

1 Sequence

Length
1572

1 Sequence Ontology Term

Identifier Name Description
transcript