WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C15H9.1.1 Sequence Name  C15H9.1.1
Length (nt)  3241   Chromosome Location  X: 6122311-6127554
Chromosome . Primary Identifier  X Chromosome Location . Start  6122311
Chromosome Location . End  6127554 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C15H9.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003778 nnt-1 C15H9.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C15H9.1 C15H9.1 3126   X: 6122322-6122439

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C15H9.1.1 6122311 6127554 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon235894   129   X: 6122311-6122439 Caenorhabditis elegans
Exon235895   179   X: 6122483-6122661 Caenorhabditis elegans
Exon235896   348   X: 6123205-6123552 Caenorhabditis elegans
Exon235897   246   X: 6123606-6123851 Caenorhabditis elegans
Exon235898   143   X: 6123895-6124037 Caenorhabditis elegans
Exon235899   100   X: 6124463-6124562 Caenorhabditis elegans
Exon235900   172   X: 6124614-6124785 Caenorhabditis elegans
Exon235901   90   X: 6124838-6124927 Caenorhabditis elegans
Exon235902   231   X: 6124976-6125206 Caenorhabditis elegans
Exon235903   80   X: 6125263-6125342 Caenorhabditis elegans
Exon235904   243   X: 6125393-6125635 Caenorhabditis elegans
Exon235905   118   X: 6125691-6125808 Caenorhabditis elegans
Exon235906   282   X: 6125855-6126136 Caenorhabditis elegans
Exon235907   152   X: 6126185-6126336 Caenorhabditis elegans
Exon235908   114   X: 6126379-6126492 Caenorhabditis elegans
Exon235909   151   X: 6126651-6126801 Caenorhabditis elegans
Exon235911   212   X: 6127036-6127247 Caenorhabditis elegans
Exon235912   251   X: 6127304-6127554 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C15H9.1.1 6122311 6127554 1

1 Sequence

Length
3241

1 Sequence Ontology Term

Identifier Name Description
transcript