WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T25B2.2a.1 Sequence Name  T25B2.2a.1
Length (nt)  1665   Chromosome Location  X: 6169643-6173746
Chromosome . Primary Identifier  X Chromosome Location . Start  6169643
Chromosome Location . End  6173746 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T25B2.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020786 T25B2.2 T25B2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T25B2.2a T25B2.2a 1338   X: 6169774-6169799

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T25B2.2a.1 6169643 6173746 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon235982   157   X: 6169643-6169799 Caenorhabditis elegans
Exon235984   55   X: 6169848-6169902 Caenorhabditis elegans
Exon235987   75   X: 6169950-6170024 Caenorhabditis elegans
Exon235990   72   X: 6170196-6170267 Caenorhabditis elegans
Exon235993   117   X: 6170540-6170656 Caenorhabditis elegans
Exon235996   105   X: 6170700-6170804 Caenorhabditis elegans
Exon235999   210   X: 6171073-6171282 Caenorhabditis elegans
Exon236002   63   X: 6171342-6171404 Caenorhabditis elegans
Exon236005   39   X: 6171501-6171539 Caenorhabditis elegans
Exon236008   85   X: 6171633-6171717 Caenorhabditis elegans
Exon236011   86   X: 6172294-6172379 Caenorhabditis elegans
Exon236016   135   X: 6172429-6172563 Caenorhabditis elegans
Exon236017   65   X: 6172638-6172702 Caenorhabditis elegans
Exon236020   42   X: 6172750-6172791 Caenorhabditis elegans
Exon236023   25   X: 6173209-6173233 Caenorhabditis elegans
Exon236026   54   X: 6173280-6173333 Caenorhabditis elegans
Exon236029   45   X: 6173379-6173423 Caenorhabditis elegans
Exon236032   235   X: 6173512-6173746 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T25B2.2a.1 6169643 6173746 1

1 Sequence

Length
1665

1 Sequence Ontology Term

Identifier Name Description
transcript