WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T25B2.2c.1 Sequence Name  T25B2.2c.1
Length (nt)  1488   Chromosome Location  X: 6169774-6173748
Chromosome . Primary Identifier  X Chromosome Location . Start  6169774
Chromosome Location . End  6173748 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T25B2.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020786 T25B2.2 T25B2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T25B2.2c T25B2.2c 1242   X: 6169774-6169799

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T25B2.2c.1 6169774 6173748 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon235983   26   X: 6169774-6169799 Caenorhabditis elegans
Exon235986   55   X: 6169848-6169902 Caenorhabditis elegans
Exon235989   75   X: 6169950-6170024 Caenorhabditis elegans
Exon235992   72   X: 6170196-6170267 Caenorhabditis elegans
Exon235995   117   X: 6170540-6170656 Caenorhabditis elegans
Exon235998   105   X: 6170700-6170804 Caenorhabditis elegans
Exon236001   210   X: 6171073-6171282 Caenorhabditis elegans
Exon236004   63   X: 6171342-6171404 Caenorhabditis elegans
Exon236007   39   X: 6171501-6171539 Caenorhabditis elegans
Exon236010   85   X: 6171633-6171717 Caenorhabditis elegans
Exon236013   86   X: 6172294-6172379 Caenorhabditis elegans
Exon236015   66   X: 6172429-6172494 Caenorhabditis elegans
Exon236019   65   X: 6172638-6172702 Caenorhabditis elegans
Exon236022   42   X: 6172750-6172791 Caenorhabditis elegans
Exon236025   25   X: 6173209-6173233 Caenorhabditis elegans
Exon236028   54   X: 6173280-6173333 Caenorhabditis elegans
Exon236031   66   X: 6173379-6173444 Caenorhabditis elegans
Exon236033   237   X: 6173512-6173748 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T25B2.2c.1 6169774 6173748 1

1 Sequence

Length
1488

1 Sequence Ontology Term

Identifier Name Description
transcript