WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T22E5.2a.1 Sequence Name  T22E5.2a.1
Length (nt)  3116   Chromosome Location  X: 6403422-6408411
Chromosome . Primary Identifier  X Chromosome Location . Start  6403422
Chromosome Location . End  6408411 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T22E5.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001622 glt-4 T22E5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T22E5.2a T22E5.2a 1500   X: 6403430-6403629

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T22E5.2a.1 6403422 6408411 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon236592   208   X: 6403422-6403629 Caenorhabditis elegans
Exon236594   98   X: 6404319-6404416 Caenorhabditis elegans
Exon236596   127   X: 6404474-6404600 Caenorhabditis elegans
Exon236598   116   X: 6404646-6404761 Caenorhabditis elegans
Exon236600   190   X: 6404807-6404996 Caenorhabditis elegans
Exon236602   157   X: 6405044-6405200 Caenorhabditis elegans
Exon236604   173   X: 6405749-6405921 Caenorhabditis elegans
Exon236606   149   X: 6405969-6406117 Caenorhabditis elegans
Exon236608   174   X: 6406167-6406340 Caenorhabditis elegans
Exon236612   1724   X: 6406688-6408411 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T22E5.2a.1 6403422 6408411 1

1 Sequence

Length
3116

1 Sequence Ontology Term

Identifier Name Description
transcript