WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00199632 Gene Name  C15B12.12
Sequence Name  ? C15B12.12 Organism  Caenorhabditis elegans
Automated Description  Is affected by cep-1; met-2; and spr-5 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  Length (nt)  ? 252
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00199632

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C15B12.12 C15B12.12 252   X: 6485073-6485324
 

Other

0 CDSs

0 RNAi Result

7 Allele

Public Name
gk964260
gk962713
gk937658
WBVar01881401
WBVar00033726
WBVar01881399
WBVar01881400

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00199632 6485073 6485324 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_6485325..6488825   3501 X: 6485325-6488825 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in spr-5(by101);met-2(n4256) L1 animals comparing to in N2 control. DeSeq2 (v.2.11.40.2), p < 0.05. WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
  ncRNAs with significantly increased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq. ncRNAs with more than 2 fold difference in expression are considered differentially expressed WBPaper00045380:cep-1(gk138)_upregulated_normal

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00199632 6485073 6485324 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
252

1 Sequence Ontology Term