WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C56E10.1.1 Sequence Name  C56E10.1.1
Length (nt)  2170   Chromosome Location  X: 6655528-6660376
Chromosome . Primary Identifier  X Chromosome Location . Start  6655528
Chromosome Location . End  6660376 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C56E10.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016975 nhr-173 C56E10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C56E10.1 C56E10.1 1527   X: 6655547-6655617

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C56E10.1.1 6655528 6660376 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon237352   90   X: 6655528-6655617 Caenorhabditis elegans
Exon237353   190   X: 6656113-6656302 Caenorhabditis elegans
Exon237354   87   X: 6656524-6656610 Caenorhabditis elegans
Exon237355   106   X: 6656763-6656868 Caenorhabditis elegans
Exon237357   66   X: 6657226-6657291 Caenorhabditis elegans
Exon237358   101   X: 6657337-6657437 Caenorhabditis elegans
Exon237359   189   X: 6658514-6658702 Caenorhabditis elegans
Exon237360   92   X: 6658753-6658844 Caenorhabditis elegans
Exon237361   88   X: 6658897-6658984 Caenorhabditis elegans
Exon237362   283   X: 6659036-6659318 Caenorhabditis elegans
Exon237363   878   X: 6659499-6660376 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C56E10.1.1 6655528 6660376 1

1 Sequence

Length
2170

1 Sequence Ontology Term

Identifier Name Description
transcript