WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F38B6.4.1 Sequence Name  F38B6.4.1
Length (nt)  2999   Chromosome Location  X: 6674869-6679848
Chromosome . Primary Identifier  X Chromosome Location . Start  6674869
Chromosome Location . End  6679848 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F38B6.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018174 F38B6.4 F38B6.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F38B6.4 F38B6.4 2928   X: 6674877-6675000

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F38B6.4.1 6674869 6679848 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon237418   132   X: 6674869-6675000 Caenorhabditis elegans
Exon237419   173   X: 6675054-6675226 Caenorhabditis elegans
Exon237420   110   X: 6675273-6675382 Caenorhabditis elegans
Exon237421   112   X: 6675427-6675538 Caenorhabditis elegans
Exon237422   160   X: 6675592-6675751 Caenorhabditis elegans
Exon237423   200   X: 6675800-6675999 Caenorhabditis elegans
Exon237424   166   X: 6676324-6676489 Caenorhabditis elegans
Exon237425   66   X: 6676536-6676601 Caenorhabditis elegans
Exon237426   139   X: 6676658-6676796 Caenorhabditis elegans
Exon237427   121   X: 6677291-6677411 Caenorhabditis elegans
Exon237428   298   X: 6677456-6677753 Caenorhabditis elegans
Exon237429   407   X: 6677799-6678205 Caenorhabditis elegans
Exon237430   95   X: 6678265-6678359 Caenorhabditis elegans
Exon237431   274   X: 6678826-6679099 Caenorhabditis elegans
Exon237432   126   X: 6679155-6679280 Caenorhabditis elegans
Exon237433   130   X: 6679324-6679453 Caenorhabditis elegans
Exon237434   71   X: 6679508-6679578 Caenorhabditis elegans
Exon237435   219   X: 6679630-6679848 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F38B6.4.1 6674869 6679848 1

1 Sequence

Length
2999

1 Sequence Ontology Term

Identifier Name Description
transcript