WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F38B6.6.1 Sequence Name  F38B6.6.1
Length (nt)  2204   Chromosome Location  X: 6684444-6690085
Chromosome . Primary Identifier  X Chromosome Location . Start  6684444
Chromosome Location . End  6690085 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F38B6.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018175 F38B6.6 F38B6.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F38B6.6 F38B6.6 2073   X: 6684559-6684704

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F38B6.6.1 6684444 6690085 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon237439   261   X: 6684444-6684704 Caenorhabditis elegans
Exon237440   242   X: 6684752-6684993 Caenorhabditis elegans
Exon237441   306   X: 6685038-6685343 Caenorhabditis elegans
Exon237442   152   X: 6685401-6685552 Caenorhabditis elegans
Exon237443   223   X: 6685601-6685823 Caenorhabditis elegans
Exon237444   185   X: 6685876-6686060 Caenorhabditis elegans
Exon237445   177   X: 6686106-6686282 Caenorhabditis elegans
Exon237446   153   X: 6686326-6686478 Caenorhabditis elegans
Exon237447   184   X: 6686526-6686709 Caenorhabditis elegans
Exon237453   86   X: 6689721-6689806 Caenorhabditis elegans
Exon237454   235   X: 6689851-6690085 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F38B6.6.1 6684444 6690085 -1

1 Sequence

Length
2204

1 Sequence Ontology Term

Identifier Name Description
transcript