WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H22K11.4a.1 Sequence Name  H22K11.4a.1
Length (nt)  1445   Chromosome Location  X: 6787256-6789548
Chromosome . Primary Identifier  X Chromosome Location . Start  6787256
Chromosome Location . End  6789548 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H22K11.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019227 sgca-1 H22K11.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H22K11.4a H22K11.4a 1377   X: 6787303-6787466

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H22K11.4a.1 6787256 6789548 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon237746   211   X: 6787256-6787466 Caenorhabditis elegans
Exon237748   206   X: 6787513-6787718 Caenorhabditis elegans
Exon237750   179   X: 6787777-6787955 Caenorhabditis elegans
Exon237752   90   X: 6788365-6788454 Caenorhabditis elegans
Exon237754   163   X: 6788512-6788674 Caenorhabditis elegans
Exon237756   124   X: 6788718-6788841 Caenorhabditis elegans
Exon237758   93   X: 6788892-6788984 Caenorhabditis elegans
Exon237761   108   X: 6789041-6789148 Caenorhabditis elegans
Exon237762   99   X: 6789233-6789331 Caenorhabditis elegans
Exon237763   172   X: 6789377-6789548 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H22K11.4a.1 6787256 6789548 -1

1 Sequence

Length
1445

1 Sequence Ontology Term

Identifier Name Description
transcript