WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0403.2.1 Sequence Name  B0403.2.1
Length (nt)  2550   Chromosome Location  X: 7050590-7055699
Chromosome . Primary Identifier  X Chromosome Location . Start  7050590
Chromosome Location . End  7055699 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0403.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006712 ubc-17 B0403.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0403.2 B0403.2 2187   X: 7050628-7050694

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0403.2.1 7050590 7055699 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon238415   105   X: 7050590-7050694 Caenorhabditis elegans
Exon238416   91   X: 7051198-7051288 Caenorhabditis elegans
Exon238417   99   X: 7051501-7051599 Caenorhabditis elegans
Exon238418   111   X: 7051648-7051758 Caenorhabditis elegans
Exon238419   121   X: 7052335-7052455 Caenorhabditis elegans
Exon238420   234   X: 7052949-7053182 Caenorhabditis elegans
Exon238421   216   X: 7053229-7053444 Caenorhabditis elegans
Exon238422   176   X: 7053494-7053669 Caenorhabditis elegans
Exon238423   93   X: 7053899-7053991 Caenorhabditis elegans
Exon238424   364   X: 7054178-7054541 Caenorhabditis elegans
Exon238425   168   X: 7054620-7054787 Caenorhabditis elegans
Exon238426   156   X: 7054834-7054989 Caenorhabditis elegans
Exon238427   244   X: 7055038-7055281 Caenorhabditis elegans
Exon238428   372   X: 7055328-7055699 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0403.2.1 7050590 7055699 1

1 Sequence

Length
2550

1 Sequence Ontology Term

Identifier Name Description
transcript