WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D1.3d.1 Sequence Name  C54D1.3d.1
Length (nt)  3297   Chromosome Location  X: 7132207-7139270
Chromosome . Primary Identifier  X Chromosome Location . Start  7132207
Chromosome Location . End  7139270 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D1.3d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002163 ist-1 C54D1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D1.3d C54D1.3d 3297   X: 7132207-7132336

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D1.3d.1 7132207 7139270 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon238552   130   X: 7132207-7132336 Caenorhabditis elegans
Exon238555   233   X: 7132891-7133123 Caenorhabditis elegans
Exon238559   138   X: 7133536-7133673 Caenorhabditis elegans
Exon238563   175   X: 7133732-7133906 Caenorhabditis elegans
Exon238567   124   X: 7133949-7134072 Caenorhabditis elegans
Exon238571   118   X: 7134127-7134244 Caenorhabditis elegans
Exon238575   188   X: 7134302-7134489 Caenorhabditis elegans
Exon238579   12   X: 7134541-7134552 Caenorhabditis elegans
Exon238581   231   X: 7135249-7135479 Caenorhabditis elegans
Exon238583   54   X: 7135529-7135582 Caenorhabditis elegans
Exon238587   222   X: 7135779-7136000 Caenorhabditis elegans
Exon238591   139   X: 7136051-7136189 Caenorhabditis elegans
Exon238595   201   X: 7136240-7136440 Caenorhabditis elegans
Exon238599   245   X: 7136880-7137124 Caenorhabditis elegans
Exon238603   162   X: 7137174-7137335 Caenorhabditis elegans
Exon238607   482   X: 7137385-7137866 Caenorhabditis elegans
Exon238611   145   X: 7138777-7138921 Caenorhabditis elegans
Exon238614   298   X: 7138973-7139270 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D1.3d.1 7132207 7139270 1

1 Sequence

Length
3297

1 Sequence Ontology Term

Identifier Name Description
transcript