WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D1.6.1 Sequence Name  C54D1.6.1
Length (nt)  2592   Chromosome Location  X: 7166005-7170625
Chromosome . Primary Identifier  X Chromosome Location . Start  7166005
Chromosome Location . End  7170625 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D1.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000238 bar-1 C54D1.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D1.6 C54D1.6 2436   X: 7166152-7166387

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D1.6.1 7166005 7170625 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon238696   383   X: 7166005-7166387 Caenorhabditis elegans
Exon238697   157   X: 7167038-7167194 Caenorhabditis elegans
Exon238698   89   X: 7167241-7167329 Caenorhabditis elegans
Exon238699   232   X: 7167374-7167605 Caenorhabditis elegans
Exon238700   96   X: 7167649-7167744 Caenorhabditis elegans
Exon238701   126   X: 7167791-7167916 Caenorhabditis elegans
Exon238702   144   X: 7167965-7168108 Caenorhabditis elegans
Exon238703   114   X: 7168152-7168265 Caenorhabditis elegans
Exon238704   246   X: 7168311-7168556 Caenorhabditis elegans
Exon238705   213   X: 7168604-7168816 Caenorhabditis elegans
Exon238706   115   X: 7168871-7168985 Caenorhabditis elegans
Exon238707   125   X: 7169034-7169158 Caenorhabditis elegans
Exon238708   147   X: 7169205-7169351 Caenorhabditis elegans
Exon238709   105   X: 7169985-7170089 Caenorhabditis elegans
Exon238710   96   X: 7170147-7170242 Caenorhabditis elegans
Exon238711   127   X: 7170308-7170434 Caenorhabditis elegans
Exon238712   77   X: 7170549-7170625 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D1.6.1 7166005 7170625 -1

1 Sequence

Length
2592

1 Sequence Ontology Term

Identifier Name Description
transcript