WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C55B6.1a.1 Sequence Name  C55B6.1a.1
Length (nt)  1816   Chromosome Location  X: 7200364-7204044
Chromosome . Primary Identifier  X Chromosome Location . Start  7200364
Chromosome Location . End  7204044 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C55B6.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016939 C55B6.1 C55B6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C55B6.1a C55B6.1a 1572   X: 7200387-7200497

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C55B6.1a.1 7200364 7204044 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon238721   134   X: 7200364-7200497 Caenorhabditis elegans
Exon238722   100   X: 7200552-7200651 Caenorhabditis elegans
Exon238723   76   X: 7201278-7201353 Caenorhabditis elegans
Exon238724   94   X: 7201403-7201496 Caenorhabditis elegans
Exon238725   270   X: 7201543-7201812 Caenorhabditis elegans
Exon238726   147   X: 7201865-7202011 Caenorhabditis elegans
Exon238728   127   X: 7202059-7202185 Caenorhabditis elegans
Exon238730   271   X: 7202416-7202686 Caenorhabditis elegans
Exon238732   96   X: 7203390-7203485 Caenorhabditis elegans
Exon238735   501   X: 7203544-7204044 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C55B6.1a.1 7200364 7204044 1

1 Sequence

Length
1816

1 Sequence Ontology Term

Identifier Name Description
transcript