WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00197178 Gene Name  T08A9.16
Sequence Name  ? T08A9.16 Organism  Caenorhabditis elegans
Automated Description  Is affected by nhr-86 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 157
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00197178

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T08A9.16 T08A9.16 157   X: 7327015-7327171
 

Other

0 CDSs

0 RNAi Result

18 Allele

Public Name
gk964260
gk963778
gk963873
gk963874
gk964088
gk964087
gk964003
gk964004
tm10855
WBVar01883317
WBVar01619555
gk284975
WBVar01883316
WBVar01980906
gk347589
gk876429
gk823067
gk777330

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00197178 7327015 7327171 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_7323835..7327014   3180 X: 7323835-7327014 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Promoters regions that bind with NHR-86 according to ChIP-Seq using NHR-86-GFP protein. N.A. WBPaper00056073:NHR-86_interacting_promoter

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00197178 7327015 7327171 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
157

1 Sequence Ontology Term