WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00196275 Gene Name  K08A8.7
Sequence Name  ? K08A8.7 Organism  Caenorhabditis elegans
Automated Description  Is affected by cep-1; mett-10; and adr-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  Length (nt)  ? 214
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00196275

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K08A8.7 K08A8.7 214   X: 7467846-7468059
 

Other

0 CDSs

0 RNAi Result

13 Allele

Public Name
gk964260
gk963873
gk963874
gk964088
gk964087
gk964005
gk964003
tm11861
gk285264
gk285263
tm580
WBVar01526861
WBVar01526860

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00196275 7467846 7468059 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2 at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066511:adr-1(tm668)_downregulated
  ncRNAs with significantly increased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq. ncRNAs with more than 2 fold difference in expression are considered differentially expressed WBPaper00045380:cep-1(gk138)_upregulated_normal
  Transcripts that showed significantly increased expression in VC1743[mett-10(ok2204)] comparing to in N2 when animals grow on peptone-rich (NA22) plates. DESeq2, p-value < 0.05, fold change > 2. WBPaper00061357:mett-10(ok2204)_upregulated_NA22

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00196275 7467846 7468059 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
214

1 Sequence Ontology Term