WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F48E3.8a.1 Sequence Name  F48E3.8a.1
Length (nt)  4943   Chromosome Location  X: 7507877-7517782
Chromosome . Primary Identifier  X Chromosome Location . Start  7507877
Chromosome Location . End  7517782 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F48E3.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018607 chts-1 F48E3.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F48E3.8a F48E3.8a 4809   X: 7508011-7508109

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F48E3.8a.1 7507877 7517782 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

26 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon239619   233   X: 7507877-7508109 Caenorhabditis elegans
Exon239627   144   X: 7508156-7508299 Caenorhabditis elegans
Exon239635   383   X: 7508350-7508732 Caenorhabditis elegans
Exon239643   383   X: 7508789-7509171 Caenorhabditis elegans
Exon239652   88   X: 7509218-7509305 Caenorhabditis elegans
Exon239675   126   X: 7512895-7513020 Caenorhabditis elegans
Exon239683   120   X: 7513068-7513187 Caenorhabditis elegans
Exon239691   129   X: 7513231-7513359 Caenorhabditis elegans
Exon239697   396   X: 7513408-7513803 Caenorhabditis elegans
Exon239703   309   X: 7513852-7514160 Caenorhabditis elegans
Exon239709   165   X: 7514249-7514413 Caenorhabditis elegans
Exon239717   249   X: 7514486-7514734 Caenorhabditis elegans
Exon239725   252   X: 7514933-7515184 Caenorhabditis elegans
Exon239733   151   X: 7515240-7515390 Caenorhabditis elegans
Exon239741   371   X: 7515438-7515808 Caenorhabditis elegans
Exon239749   129   X: 7515855-7515983 Caenorhabditis elegans
Exon239757   123   X: 7516031-7516153 Caenorhabditis elegans
Exon239762   132   X: 7516203-7516334 Caenorhabditis elegans
Exon239770   165   X: 7516387-7516551 Caenorhabditis elegans
Exon239778   177   X: 7516606-7516782 Caenorhabditis elegans
Exon239786   186   X: 7516828-7517013 Caenorhabditis elegans
Exon239794   113   X: 7517064-7517176 Caenorhabditis elegans
Exon239802   79   X: 7517220-7517298 Caenorhabditis elegans
Exon239810   69   X: 7517348-7517416 Caenorhabditis elegans
Exon239818   237   X: 7517463-7517699 Caenorhabditis elegans
Exon239826   34   X: 7517749-7517782 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F48E3.8a.1 7507877 7517782 -1

1 Sequence

Length
4943

1 Sequence Ontology Term

Identifier Name Description
transcript