WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F48E3.8b.1 Sequence Name  F48E3.8b.1
Length (nt)  4818   Chromosome Location  X: 7507879-7517782
Chromosome . Primary Identifier  X Chromosome Location . Start  7507879
Chromosome Location . End  7517782 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F48E3.8b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018607 chts-1 F48E3.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F48E3.8b F48E3.8b 4686   X: 7508011-7508109

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F48E3.8b.1 7507879 7517782 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

25 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon239620   231   X: 7507879-7508109 Caenorhabditis elegans
Exon239628   144   X: 7508156-7508299 Caenorhabditis elegans
Exon239636   383   X: 7508350-7508732 Caenorhabditis elegans
Exon239644   383   X: 7508789-7509171 Caenorhabditis elegans
Exon239653   88   X: 7509218-7509305 Caenorhabditis elegans
Exon239676   126   X: 7512895-7513020 Caenorhabditis elegans
Exon239684   120   X: 7513068-7513187 Caenorhabditis elegans
Exon239692   129   X: 7513231-7513359 Caenorhabditis elegans
Exon239698   396   X: 7513408-7513803 Caenorhabditis elegans
Exon239704   309   X: 7513852-7514160 Caenorhabditis elegans
Exon239710   165   X: 7514249-7514413 Caenorhabditis elegans
Exon239718   249   X: 7514486-7514734 Caenorhabditis elegans
Exon239726   252   X: 7514933-7515184 Caenorhabditis elegans
Exon239734   151   X: 7515240-7515390 Caenorhabditis elegans
Exon239742   371   X: 7515438-7515808 Caenorhabditis elegans
Exon239750   129   X: 7515855-7515983 Caenorhabditis elegans
Exon239763   132   X: 7516203-7516334 Caenorhabditis elegans
Exon239771   165   X: 7516387-7516551 Caenorhabditis elegans
Exon239779   177   X: 7516606-7516782 Caenorhabditis elegans
Exon239787   186   X: 7516828-7517013 Caenorhabditis elegans
Exon239795   113   X: 7517064-7517176 Caenorhabditis elegans
Exon239803   79   X: 7517220-7517298 Caenorhabditis elegans
Exon239811   69   X: 7517348-7517416 Caenorhabditis elegans
Exon239819   237   X: 7517463-7517699 Caenorhabditis elegans
Exon239827   34   X: 7517749-7517782 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F48E3.8b.1 7507879 7517782 -1

1 Sequence

Length
4818

1 Sequence Ontology Term

Identifier Name Description
transcript