WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F08C6.3.1 Sequence Name  F08C6.3.1
Length (nt)  2267   Chromosome Location  X: 7565323-7568145
Chromosome . Primary Identifier  X Chromosome Location . Start  7565323
Chromosome Location . End  7568145 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F08C6.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007059 vps-52 F08C6.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F08C6.3 F08C6.3 2109   X: 7565331-7565487

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F08C6.3.1 7565323 7568145 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon239939   165   X: 7565323-7565487 Caenorhabditis elegans
Exon239940   119   X: 7565530-7565648 Caenorhabditis elegans
Exon239941   96   X: 7565711-7565806 Caenorhabditis elegans
Exon239942   231   X: 7565849-7566079 Caenorhabditis elegans
Exon239943   234   X: 7566134-7566367 Caenorhabditis elegans
Exon239944   207   X: 7566418-7566624 Caenorhabditis elegans
Exon239945   126   X: 7566675-7566800 Caenorhabditis elegans
Exon239946   282   X: 7566910-7567191 Caenorhabditis elegans
Exon239947   391   X: 7567240-7567630 Caenorhabditis elegans
Exon239948   119   X: 7567678-7567796 Caenorhabditis elegans
Exon239949   297   X: 7567849-7568145 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F08C6.3.1 7565323 7568145 1

1 Sequence

Length
2267

1 Sequence Ontology Term

Identifier Name Description
transcript