WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F08C6.1a.1 Sequence Name  F08C6.1a.1
Length (nt)  3686   Chromosome Location  X: 7586209-7595416
Chromosome . Primary Identifier  X Chromosome Location . Start  7586209
Chromosome Location . End  7595416 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F08C6.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000083 adt-2 F08C6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F08C6.1a F08C6.1a 3063   X: 7586209-7586247

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F08C6.1a.1 7586209 7595416 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon239980   39   X: 7586209-7586247 Caenorhabditis elegans
Exon239986   76   X: 7588662-7588737 Caenorhabditis elegans
Exon239988   74   X: 7588786-7588859 Caenorhabditis elegans
Exon239990   192   X: 7588905-7589096 Caenorhabditis elegans
Exon239992   255   X: 7589165-7589419 Caenorhabditis elegans
Exon239994   195   X: 7589464-7589658 Caenorhabditis elegans
Exon239996   119   X: 7589779-7589897 Caenorhabditis elegans
Exon239998   147   X: 7589954-7590100 Caenorhabditis elegans
Exon240000   129   X: 7590144-7590272 Caenorhabditis elegans
Exon240002   133   X: 7590481-7590613 Caenorhabditis elegans
Exon240005   100   X: 7591240-7591339 Caenorhabditis elegans
Exon240007   217   X: 7591521-7591737 Caenorhabditis elegans
Exon240009   112   X: 7591792-7591903 Caenorhabditis elegans
Exon240011   102   X: 7591950-7592051 Caenorhabditis elegans
Exon240013   284   X: 7592360-7592643 Caenorhabditis elegans
Exon240015   215   X: 7592693-7592907 Caenorhabditis elegans
Exon240017   137   X: 7593224-7593360 Caenorhabditis elegans
Exon240019   385   X: 7593413-7593797 Caenorhabditis elegans
Exon240023   775   X: 7594642-7595416 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F08C6.1a.1 7586209 7595416 1

1 Sequence

Length
3686

1 Sequence Ontology Term

Identifier Name Description
transcript