WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C53C9.3d.1 Sequence Name  C53C9.3d.1
Length (nt)  1980   Chromosome Location  X: 7690498-7707131
Chromosome . Primary Identifier  X Chromosome Location . Start  7690498
Chromosome Location . End  7707131 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C53C9.3d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002242 kvs-1 C53C9.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C53C9.3d C53C9.3d 1500   X: 7690933-7690990

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C53C9.3d.1 7690498 7707131 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240269   493   X: 7690498-7690990 Caenorhabditis elegans
Exon240277   100   X: 7691736-7691835 Caenorhabditis elegans
Exon240281   230   X: 7691888-7692117 Caenorhabditis elegans
Exon240285   183   X: 7692777-7692959 Caenorhabditis elegans
Exon240289   115   X: 7693008-7693122 Caenorhabditis elegans
Exon240290   27   X: 7693553-7693579 Caenorhabditis elegans
Exon240294   55   X: 7693678-7693732 Caenorhabditis elegans
Exon240298   153   X: 7694281-7694433 Caenorhabditis elegans
Exon240302   43   X: 7694523-7694565 Caenorhabditis elegans
Exon240306   182   X: 7694944-7695125 Caenorhabditis elegans
Exon240310   222   X: 7696007-7696228 Caenorhabditis elegans
Exon240314   91   X: 7696431-7696521 Caenorhabditis elegans
Exon240320   86   X: 7707046-7707131 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C53C9.3d.1 7690498 7707131 -1

1 Sequence

Length
1980

1 Sequence Ontology Term

Identifier Name Description
transcript