WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C53C9.3b.1 Sequence Name  C53C9.3b.1
Length (nt)  1488   Chromosome Location  X: 7690933-7696704
Chromosome . Primary Identifier  X Chromosome Location . Start  7690933
Chromosome Location . End  7696704 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C53C9.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002242 kvs-1 C53C9.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C53C9.3b C53C9.3b 1488   X: 7690933-7690990

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C53C9.3b.1 7690933 7696704 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240272   58   X: 7690933-7690990 Caenorhabditis elegans
Exon240275   100   X: 7691736-7691835 Caenorhabditis elegans
Exon240279   230   X: 7691888-7692117 Caenorhabditis elegans
Exon240283   183   X: 7692777-7692959 Caenorhabditis elegans
Exon240287   115   X: 7693008-7693122 Caenorhabditis elegans
Exon240292   55   X: 7693678-7693732 Caenorhabditis elegans
Exon240296   153   X: 7694281-7694433 Caenorhabditis elegans
Exon240300   43   X: 7694523-7694565 Caenorhabditis elegans
Exon240304   182   X: 7694944-7695125 Caenorhabditis elegans
Exon240308   222   X: 7696007-7696228 Caenorhabditis elegans
Exon240312   91   X: 7696431-7696521 Caenorhabditis elegans
Exon240315   56   X: 7696649-7696704 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C53C9.3b.1 7690933 7696704 -1

1 Sequence

Length
1488

1 Sequence Ontology Term

Identifier Name Description
transcript