WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C47C12.6a.1 Sequence Name  C47C12.6a.1
Length (nt)  2489   Chromosome Location  X: 7763209-7774817
Chromosome . Primary Identifier  X Chromosome Location . Start  7763209
Chromosome Location . End  7774817 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C47C12.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000950 deg-1 C47C12.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C47C12.6a C47C12.6a 2337   X: 7763219-7763563

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C47C12.6a.1 7763209 7774817 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240405   355   X: 7763209-7763563 Caenorhabditis elegans
Exon240412   99   X: 7763608-7763706 Caenorhabditis elegans
Exon240420   213   X: 7763833-7764045 Caenorhabditis elegans
Exon240428   99   X: 7764110-7764208 Caenorhabditis elegans
Exon240436   65   X: 7764251-7764315 Caenorhabditis elegans
Exon240444   136   X: 7765183-7765318 Caenorhabditis elegans
Exon240455   118   X: 7765642-7765759 Caenorhabditis elegans
Exon240463   54   X: 7765947-7766000 Caenorhabditis elegans
Exon240471   62   X: 7766540-7766601 Caenorhabditis elegans
Exon240479   158   X: 7766646-7766803 Caenorhabditis elegans
Exon240487   262   X: 7766852-7767113 Caenorhabditis elegans
Exon240495   217   X: 7767164-7767380 Caenorhabditis elegans
Exon240503   149   X: 7767426-7767574 Caenorhabditis elegans
Exon240511   72   X: 7767979-7768050 Caenorhabditis elegans
Exon240523   103   X: 7774342-7774444 Caenorhabditis elegans
Exon240538   327   X: 7774491-7774817 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C47C12.6a.1 7763209 7774817 1

1 Sequence

Length
2489

1 Sequence Ontology Term

Identifier Name Description
transcript