WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C47C12.6e.1 Sequence Name  C47C12.6e.1
Length (nt)  2505   Chromosome Location  X: 7763219-7774675
Chromosome . Primary Identifier  X Chromosome Location . Start  7763219
Chromosome Location . End  7774675 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C47C12.6e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000950 deg-1 C47C12.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C47C12.6e C47C12.6e 2505   X: 7763219-7763563

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C47C12.6e.1 7763219 7774675 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240389   345   X: 7763219-7763563 Caenorhabditis elegans
Exon240397   99   X: 7763608-7763706 Caenorhabditis elegans
Exon240405   213   X: 7763833-7764045 Caenorhabditis elegans
Exon240413   99   X: 7764110-7764208 Caenorhabditis elegans
Exon240421   65   X: 7764251-7764315 Caenorhabditis elegans
Exon240429   136   X: 7765183-7765318 Caenorhabditis elegans
Exon240440   118   X: 7765642-7765759 Caenorhabditis elegans
Exon240447   54   X: 7765947-7766000 Caenorhabditis elegans
Exon240450   168   X: 7766087-7766254 Caenorhabditis elegans
Exon240456   62   X: 7766540-7766601 Caenorhabditis elegans
Exon240464   158   X: 7766646-7766803 Caenorhabditis elegans
Exon240472   262   X: 7766852-7767113 Caenorhabditis elegans
Exon240480   217   X: 7767164-7767380 Caenorhabditis elegans
Exon240488   149   X: 7767426-7767574 Caenorhabditis elegans
Exon240496   72   X: 7767979-7768050 Caenorhabditis elegans
Exon240508   103   X: 7774342-7774444 Caenorhabditis elegans
Exon240514   185   X: 7774491-7774675 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C47C12.6e.1 7763219 7774675 1

1 Sequence

Length
2505

1 Sequence Ontology Term

Identifier Name Description
transcript