WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D2.5c.1 Sequence Name  C54D2.5c.1
Length (nt)  6181   Chromosome Location  X: 7847678-7861307
Chromosome . Primary Identifier  X Chromosome Location . Start  7847678
Chromosome Location . End  7861307 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D2.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000367 cca-1 C54D2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D2.5c C54D2.5c 5559   X: 7848224-7848278

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5c.1 7847678 7861307 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240696   601   X: 7847678-7848278 Caenorhabditis elegans
Exon240706   167   X: 7848334-7848500 Caenorhabditis elegans
Exon240713   179   X: 7849296-7849474 Caenorhabditis elegans
Exon240720   199   X: 7849590-7849788 Caenorhabditis elegans
Exon240727   201   X: 7850445-7850645 Caenorhabditis elegans
Exon240734   359   X: 7850689-7851047 Caenorhabditis elegans
Exon240743   150   X: 7851091-7851240 Caenorhabditis elegans
Exon240748   518   X: 7852006-7852523 Caenorhabditis elegans
Exon240755   242   X: 7852580-7852821 Caenorhabditis elegans
Exon240762   810   X: 7852865-7853674 Caenorhabditis elegans
Exon240769   180   X: 7853723-7853902 Caenorhabditis elegans
Exon240779   130   X: 7854299-7854428 Caenorhabditis elegans
Exon240784   186   X: 7854524-7854709 Caenorhabditis elegans
Exon240791   502   X: 7854757-7855258 Caenorhabditis elegans
Exon240798   127   X: 7855305-7855431 Caenorhabditis elegans
Exon240805   119   X: 7855479-7855597 Caenorhabditis elegans
Exon240812   127   X: 7855643-7855769 Caenorhabditis elegans
Exon240819   93   X: 7855816-7855908 Caenorhabditis elegans
Exon240826   75   X: 7855960-7856034 Caenorhabditis elegans
Exon240833   82   X: 7856086-7856167 Caenorhabditis elegans
Exon240840   108   X: 7856215-7856322 Caenorhabditis elegans
Exon240847   78   X: 7856396-7856473 Caenorhabditis elegans
Exon240854   234   X: 7856523-7856756 Caenorhabditis elegans
Exon240861   92   X: 7857325-7857416 Caenorhabditis elegans
Exon240868   235   X: 7857466-7857700 Caenorhabditis elegans
Exon240875   104   X: 7857749-7857852 Caenorhabditis elegans
Exon240882   57   X: 7858270-7858326 Caenorhabditis elegans
Exon240889   82   X: 7860000-7860081 Caenorhabditis elegans
Exon240897   144   X: 7861164-7861307 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5c.1 7847678 7861307 -1

1 Sequence

Length
6181

1 Sequence Ontology Term

Identifier Name Description
transcript