WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D2.5a.1 Sequence Name  C54D2.5a.1
Length (nt)  5919   Chromosome Location  X: 7847947-7875954
Chromosome . Primary Identifier  X Chromosome Location . Start  7847947
Chromosome Location . End  7875954 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D2.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000367 cca-1 C54D2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D2.5a C54D2.5a 5514   X: 7848224-7848278

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5a.1 7847947 7875954 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

30 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240681   332   X: 7847947-7848278 Caenorhabditis elegans
Exon240683   167   X: 7848334-7848500 Caenorhabditis elegans
Exon240690   179   X: 7849296-7849474 Caenorhabditis elegans
Exon240697   199   X: 7849590-7849788 Caenorhabditis elegans
Exon240704   201   X: 7850445-7850645 Caenorhabditis elegans
Exon240711   359   X: 7850689-7851047 Caenorhabditis elegans
Exon240718   105   X: 7851091-7851195 Caenorhabditis elegans
Exon240725   518   X: 7852006-7852523 Caenorhabditis elegans
Exon240732   242   X: 7852580-7852821 Caenorhabditis elegans
Exon240739   810   X: 7852865-7853674 Caenorhabditis elegans
Exon240746   180   X: 7853723-7853902 Caenorhabditis elegans
Exon240756   130   X: 7854299-7854428 Caenorhabditis elegans
Exon240761   186   X: 7854524-7854709 Caenorhabditis elegans
Exon240768   502   X: 7854757-7855258 Caenorhabditis elegans
Exon240775   127   X: 7855305-7855431 Caenorhabditis elegans
Exon240782   119   X: 7855479-7855597 Caenorhabditis elegans
Exon240789   127   X: 7855643-7855769 Caenorhabditis elegans
Exon240796   93   X: 7855816-7855908 Caenorhabditis elegans
Exon240803   75   X: 7855960-7856034 Caenorhabditis elegans
Exon240810   82   X: 7856086-7856167 Caenorhabditis elegans
Exon240817   108   X: 7856215-7856322 Caenorhabditis elegans
Exon240824   78   X: 7856396-7856473 Caenorhabditis elegans
Exon240831   234   X: 7856523-7856756 Caenorhabditis elegans
Exon240838   92   X: 7857325-7857416 Caenorhabditis elegans
Exon240845   235   X: 7857466-7857700 Caenorhabditis elegans
Exon240852   104   X: 7857749-7857852 Caenorhabditis elegans
Exon240859   57   X: 7858270-7858326 Caenorhabditis elegans
Exon240866   82   X: 7860000-7860081 Caenorhabditis elegans
Exon240875   144   X: 7861164-7861307 Caenorhabditis elegans
Exon240893   52   X: 7875903-7875954 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5a.1 7847947 7875954 -1

1 Sequence

Length
5919

1 Sequence Ontology Term

Identifier Name Description
transcript