WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F53G12.5a Sequence Name  F53G12.5a
Length (nt)  1248   Chromosome Location  I: 128698-128896
Chromosome . Primary Identifier  I Chromosome Location . Start  128698
Chromosome Location . End  128896
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53G12.5a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE25000 MEX-3, isoform a 45.4 415 Caenorhabditis elegans
 

Other

64 RNAi

WormBase ID
WBRNAi00114291
WBRNAi00114056
WBRNAi00114135
WBRNAi00114214
WBRNAi00106575
WBRNAi00106590
WBRNAi00110443
WBRNAi00066938
WBRNAi00066948
WBRNAi00066981
WBRNAi00067085
WBRNAi00067681
WBRNAi00067704
WBRNAi00048170
WBRNAi00083279
WBRNAi00110449
WBRNAi00081382
WBRNAi00083265
WBRNAi00114251
WBRNAi00114095
WBRNAi00097397
WBRNAi00116728
WBRNAi00000185
WBRNAi00000063
WBRNAi00114016
WBRNAi00077277
WBRNAi00077291
WBRNAi00087359
WBRNAi00087358
WBRNAi00087361

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F53G12.5a 128698 128896 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003229 mex-3 F53G12.5 Caenorhabditis elegans

6 Locations


Feature . Primary Identifier
Start End Strand
CDS:F53G12.5a 128698 128896 1
CDS:F53G12.5a 128945 129124 1
CDS:F53G12.5a 129167 129333 1
CDS:F53G12.5a 132103 132553 1
CDS:F53G12.5a 132612 132693 1
CDS:F53G12.5a 133414 133582 1

1 Sequence

Length
1248

1 Sequence Ontology Term

Identifier Name Description
CDS  

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F53G12.5a.2 F53G12.5a.2 2039   I: 127286-134269
Transcript:F53G12.5a.3 F53G12.5a.3 1989   I: 127384-134269
Transcript:F53G12.5a.1 F53G12.5a.1 1934   I: 128697-134267