WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D2.5g.1 Sequence Name  C54D2.5g.1
Length (nt)  5580   Chromosome Location  X: 7848224-7861231
Chromosome . Primary Identifier  X Chromosome Location . Start  7848224
Chromosome Location . End  7861231 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D2.5g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000367 cca-1 C54D2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D2.5g C54D2.5g 5580   X: 7848224-7848278

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5g.1 7848224 7861231 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240702   55   X: 7848224-7848278 Caenorhabditis elegans
Exon240709   167   X: 7848334-7848500 Caenorhabditis elegans
Exon240716   179   X: 7849296-7849474 Caenorhabditis elegans
Exon240723   199   X: 7849590-7849788 Caenorhabditis elegans
Exon240730   201   X: 7850445-7850645 Caenorhabditis elegans
Exon240737   359   X: 7850689-7851047 Caenorhabditis elegans
Exon240744   150   X: 7851091-7851240 Caenorhabditis elegans
Exon240751   518   X: 7852006-7852523 Caenorhabditis elegans
Exon240758   242   X: 7852580-7852821 Caenorhabditis elegans
Exon240765   810   X: 7852865-7853674 Caenorhabditis elegans
Exon240772   180   X: 7853723-7853902 Caenorhabditis elegans
Exon240775   151   X: 7854051-7854201 Caenorhabditis elegans
Exon240787   186   X: 7854524-7854709 Caenorhabditis elegans
Exon240794   502   X: 7854757-7855258 Caenorhabditis elegans
Exon240801   127   X: 7855305-7855431 Caenorhabditis elegans
Exon240808   119   X: 7855479-7855597 Caenorhabditis elegans
Exon240815   127   X: 7855643-7855769 Caenorhabditis elegans
Exon240822   93   X: 7855816-7855908 Caenorhabditis elegans
Exon240829   75   X: 7855960-7856034 Caenorhabditis elegans
Exon240836   82   X: 7856086-7856167 Caenorhabditis elegans
Exon240843   108   X: 7856215-7856322 Caenorhabditis elegans
Exon240850   78   X: 7856396-7856473 Caenorhabditis elegans
Exon240857   234   X: 7856523-7856756 Caenorhabditis elegans
Exon240864   92   X: 7857325-7857416 Caenorhabditis elegans
Exon240871   235   X: 7857466-7857700 Caenorhabditis elegans
Exon240878   104   X: 7857749-7857852 Caenorhabditis elegans
Exon240885   57   X: 7858270-7858326 Caenorhabditis elegans
Exon240892   82   X: 7860000-7860081 Caenorhabditis elegans
Exon240894   68   X: 7861164-7861231 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5g.1 7848224 7861231 -1

1 Sequence

Length
5580

1 Sequence Ontology Term

Identifier Name Description
transcript