WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D2.5g.1 Sequence Name  C54D2.5g.1
Length (nt)  5580   Chromosome Location  X: 7848224-7861231
Chromosome . Primary Identifier  X Chromosome Location . Start  7848224
Chromosome Location . End  7861231 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D2.5g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000367 cca-1 C54D2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D2.5g C54D2.5g 5580   X: 7848224-7848278

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5g.1 7848224 7861231 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240682   55   X: 7848224-7848278 Caenorhabditis elegans
Exon240689   167   X: 7848334-7848500 Caenorhabditis elegans
Exon240696   179   X: 7849296-7849474 Caenorhabditis elegans
Exon240703   199   X: 7849590-7849788 Caenorhabditis elegans
Exon240710   201   X: 7850445-7850645 Caenorhabditis elegans
Exon240717   359   X: 7850689-7851047 Caenorhabditis elegans
Exon240724   150   X: 7851091-7851240 Caenorhabditis elegans
Exon240731   518   X: 7852006-7852523 Caenorhabditis elegans
Exon240738   242   X: 7852580-7852821 Caenorhabditis elegans
Exon240745   810   X: 7852865-7853674 Caenorhabditis elegans
Exon240752   180   X: 7853723-7853902 Caenorhabditis elegans
Exon240755   151   X: 7854051-7854201 Caenorhabditis elegans
Exon240767   186   X: 7854524-7854709 Caenorhabditis elegans
Exon240774   502   X: 7854757-7855258 Caenorhabditis elegans
Exon240781   127   X: 7855305-7855431 Caenorhabditis elegans
Exon240788   119   X: 7855479-7855597 Caenorhabditis elegans
Exon240795   127   X: 7855643-7855769 Caenorhabditis elegans
Exon240802   93   X: 7855816-7855908 Caenorhabditis elegans
Exon240809   75   X: 7855960-7856034 Caenorhabditis elegans
Exon240816   82   X: 7856086-7856167 Caenorhabditis elegans
Exon240823   108   X: 7856215-7856322 Caenorhabditis elegans
Exon240830   78   X: 7856396-7856473 Caenorhabditis elegans
Exon240837   234   X: 7856523-7856756 Caenorhabditis elegans
Exon240844   92   X: 7857325-7857416 Caenorhabditis elegans
Exon240851   235   X: 7857466-7857700 Caenorhabditis elegans
Exon240858   104   X: 7857749-7857852 Caenorhabditis elegans
Exon240865   57   X: 7858270-7858326 Caenorhabditis elegans
Exon240872   82   X: 7860000-7860081 Caenorhabditis elegans
Exon240874   68   X: 7861164-7861231 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5g.1 7848224 7861231 -1

1 Sequence

Length
5580

1 Sequence Ontology Term

Identifier Name Description
transcript