WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48G1BL.2b.1 Sequence Name  Y48G1BL.2b.1
Length (nt)  5106   Chromosome Location  I: 192695-207952
Chromosome . Primary Identifier  I Chromosome Location . Start  192695
Chromosome Location . End  207952 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48G1BL.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000227 atm-1 Y48G1BL.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48G1BL.2b Y48G1BL.2b 5106   I: 192695-193095

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48G1BL.2b.1 192695 207952 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon494   401   I: 192695-193095 Caenorhabditis elegans
Exon496   346   I: 193589-193934 Caenorhabditis elegans
Exon498   89   I: 194710-194798 Caenorhabditis elegans
Exon500   196   I: 195020-195215 Caenorhabditis elegans
Exon502   167   I: 195357-195523 Caenorhabditis elegans
Exon504   251   I: 196083-196333 Caenorhabditis elegans
Exon506   449   I: 197205-197653 Caenorhabditis elegans
Exon508   115   I: 197959-198073 Caenorhabditis elegans
Exon510   457   I: 200047-200503 Caenorhabditis elegans
Exon512   391   I: 201303-201693 Caenorhabditis elegans
Exon514   324   I: 202124-202447 Caenorhabditis elegans
Exon516   292   I: 203067-203358 Caenorhabditis elegans
Exon518   424   I: 204262-204685 Caenorhabditis elegans
Exon520   145   I: 205074-205218 Caenorhabditis elegans
Exon522   298   I: 205300-205597 Caenorhabditis elegans
Exon524   172   I: 206420-206591 Caenorhabditis elegans
Exon526   89   I: 206693-206781 Caenorhabditis elegans
Exon528   251   I: 207061-207311 Caenorhabditis elegans
Exon529   249   I: 207704-207952 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48G1BL.2b.1 192695 207952 1

1 Sequence

Length
5106

1 Sequence Ontology Term

Identifier Name Description
transcript