WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C39D10.3a.1 Sequence Name  C39D10.3a.1
Length (nt)  1261   Chromosome Location  X: 7884294-7887479
Chromosome . Primary Identifier  X Chromosome Location . Start  7884294
Chromosome Location . End  7887479 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C39D10.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016531 pcyt-2.2 C39D10.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C39D10.3a C39D10.3a 1086   X: 7884369-7884442

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C39D10.3a.1 7884294 7887479 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240916   149   X: 7884294-7884442 Caenorhabditis elegans
Exon240917   94   X: 7884496-7884589 Caenorhabditis elegans
Exon240918   81   X: 7884682-7884762 Caenorhabditis elegans
Exon240919   76   X: 7884809-7884884 Caenorhabditis elegans
Exon240920   101   X: 7884958-7885058 Caenorhabditis elegans
Exon240921   96   X: 7885397-7885492 Caenorhabditis elegans
Exon240923   102   X: 7885536-7885637 Caenorhabditis elegans
Exon240925   111   X: 7886450-7886560 Caenorhabditis elegans
Exon240927   78   X: 7886610-7886687 Caenorhabditis elegans
Exon240929   72   X: 7886737-7886808 Caenorhabditis elegans
Exon240931   131   X: 7887122-7887252 Caenorhabditis elegans
Exon240934   170   X: 7887310-7887479 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C39D10.3a.1 7884294 7887479 1

1 Sequence

Length
1261

1 Sequence Ontology Term

Identifier Name Description
transcript