WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F45E1.7a.1 Sequence Name  F45E1.7a.1
Length (nt)  1886   Chromosome Location  X: 7988931-7998229
Chromosome . Primary Identifier  X Chromosome Location . Start  7988931
Chromosome Location . End  7998229 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F45E1.7a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018467 sdpn-1 F45E1.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F45E1.7a F45E1.7a 1470   X: 7989195-7989245

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F45E1.7a.1 7988931 7998229 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon241165   315   X: 7988931-7989245 Caenorhabditis elegans
Exon241168   339   X: 7989294-7989632 Caenorhabditis elegans
Exon241171   186   X: 7989684-7989869 Caenorhabditis elegans
Exon241174   130   X: 7989939-7990068 Caenorhabditis elegans
Exon241177   132   X: 7990113-7990244 Caenorhabditis elegans
Exon241180   125   X: 7990463-7990587 Caenorhabditis elegans
Exon241183   111   X: 7991463-7991573 Caenorhabditis elegans
Exon241186   99   X: 7992208-7992306 Caenorhabditis elegans
Exon241189   225   X: 7992358-7992582 Caenorhabditis elegans
Exon241192   73   X: 7992737-7992809 Caenorhabditis elegans
Exon241198   151   X: 7998079-7998229 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F45E1.7a.1 7988931 7998229 -1

1 Sequence

Length
1886

1 Sequence Ontology Term

Identifier Name Description
transcript