WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219269 Gene Name  mir-5553
Sequence Name  ? C46F2.2 Organism  Caenorhabditis elegans
Automated Description  Is affected by alg-5 based on RNA-seq studies. Biotype  SO:0001265
Genetic Position  X :-0.605345± Length (nt)  ? 110
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219269

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C46F2.2b C46F2.2b 23   X: 8077577-8077599
Transcript:C46F2.2a C46F2.2a 23   X: 8077616-8077638
 

Other

0 CDSs

0 RNAi Result

8 Allele

Public Name
gk964260
gk962707
gk964193
gk964194
gk963896
gk963732
gkDf2
gk420897

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219269 8077555 8077664 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_8075010..8077554   2545 X: 8075010-8077554 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  MicroRNAs that showed significantly decreased expression in alg-5(ram2), comparing to in N2. DESeq2, Fold change > 1.5. WBPaper00051404:alg-5(ram2)_downregulated_miRNA
  MicroRNAs that showed significantly decreased expression in alg-5(tm1163), comparing to in N2. DESeq2, Fold change > 1.5. WBPaper00051404:alg-5(tm1163)_downregulated_miRNA
  MicroRNAs that showed significantly increased expression in alg-5(ram2), comparing to in N2. DESeq2, Fold change > 1.5. WBPaper00051404:alg-5(ram2)_upregulated_miRNA
  MicroRNAs that showed significantly increased expression in alg-5(tm1163), comparing to in N2. DESeq2, Fold change > 1.5. WBPaper00051404:alg-5(tm1163)_upregulated_miRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219269 8077555 8077664 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
110

1 Sequence Ontology Term