WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F13B9.1b.1 Sequence Name  F13B9.1b.1
Length (nt)  5242   Chromosome Location  X: 8287261-8294514
Chromosome . Primary Identifier  X Chromosome Location . Start  8287261
Chromosome Location . End  8294514 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F13B9.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017419 sec-16A.2 F13B9.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F13B9.1b F13B9.1b 4845   X: 8287261-8287495

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F13B9.1b.1 8287261 8294514 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon241785   235   X: 8287261-8287495 Caenorhabditis elegans
Exon241788   155   X: 8287563-8287717 Caenorhabditis elegans
Exon241794   393   X: 8287764-8288156 Caenorhabditis elegans
Exon241800   123   X: 8288314-8288436 Caenorhabditis elegans
Exon241804   204   X: 8288601-8288804 Caenorhabditis elegans
Exon241810   179   X: 8288852-8289030 Caenorhabditis elegans
Exon241816   1084   X: 8289076-8290159 Caenorhabditis elegans
Exon241822   107   X: 8290221-8290327 Caenorhabditis elegans
Exon241829   403   X: 8290712-8291114 Caenorhabditis elegans
Exon241835   327   X: 8291165-8291491 Caenorhabditis elegans
Exon241841   209   X: 8291568-8291776 Caenorhabditis elegans
Exon241847   249   X: 8291824-8292072 Caenorhabditis elegans
Exon241853   291   X: 8292126-8292416 Caenorhabditis elegans
Exon241860   674   X: 8292469-8293142 Caenorhabditis elegans
Exon241865   609   X: 8293906-8294514 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F13B9.1b.1 8287261 8294514 1

1 Sequence

Length
5242

1 Sequence Ontology Term

Identifier Name Description
transcript