WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F13B9.1c.1 Sequence Name  F13B9.1c.1
Length (nt)  5230   Chromosome Location  X: 8287261-8294517
Chromosome . Primary Identifier  X Chromosome Location . Start  8287261
Chromosome Location . End  8294517 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F13B9.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017419 sec-16A.2 F13B9.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F13B9.1c F13B9.1c 4830   X: 8287261-8287495

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F13B9.1c.1 8287261 8294517 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon241786   235   X: 8287261-8287495 Caenorhabditis elegans
Exon241789   155   X: 8287563-8287717 Caenorhabditis elegans
Exon241795   393   X: 8287764-8288156 Caenorhabditis elegans
Exon241801   123   X: 8288314-8288436 Caenorhabditis elegans
Exon241805   204   X: 8288601-8288804 Caenorhabditis elegans
Exon241811   179   X: 8288852-8289030 Caenorhabditis elegans
Exon241817   1084   X: 8289076-8290159 Caenorhabditis elegans
Exon241823   107   X: 8290221-8290327 Caenorhabditis elegans
Exon241830   403   X: 8290712-8291114 Caenorhabditis elegans
Exon241836   327   X: 8291165-8291491 Caenorhabditis elegans
Exon241842   209   X: 8291568-8291776 Caenorhabditis elegans
Exon241848   249   X: 8291824-8292072 Caenorhabditis elegans
Exon241854   291   X: 8292126-8292416 Caenorhabditis elegans
Exon241858   671   X: 8292469-8293139 Caenorhabditis elegans
Exon241867   600   X: 8293918-8294517 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F13B9.1c.1 8287261 8294517 1

1 Sequence

Length
5230

1 Sequence Ontology Term

Identifier Name Description
transcript