WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F40B5.2b.1 Sequence Name  F40B5.2b.1
Length (nt)  1594   Chromosome Location  X: 8367853-8371617
Chromosome . Primary Identifier  X Chromosome Location . Start  8367853
Chromosome Location . End  8371617 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F40B5.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018226 F40B5.2 F40B5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F40B5.2b F40B5.2b 1326   X: 8368539-8368726

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F40B5.2b.1 8367853 8371617 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon241951   45   X: 8367853-8367897 Caenorhabditis elegans
Exon241954   191   X: 8368536-8368726 Caenorhabditis elegans
Exon241957   137   X: 8369129-8369265 Caenorhabditis elegans
Exon241960   145   X: 8369657-8369801 Caenorhabditis elegans
Exon241963   127   X: 8369851-8369977 Caenorhabditis elegans
Exon241966   121   X: 8370474-8370594 Caenorhabditis elegans
Exon241969   111   X: 8370647-8370757 Caenorhabditis elegans
Exon241972   68   X: 8370801-8370868 Caenorhabditis elegans
Exon241975   305   X: 8370914-8371218 Caenorhabditis elegans
Exon241977   344   X: 8371274-8371617 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F40B5.2b.1 8367853 8371617 1

1 Sequence

Length
1594

1 Sequence Ontology Term

Identifier Name Description
transcript