WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F40B5.2a.1 Sequence Name  F40B5.2a.1
Length (nt)  1662   Chromosome Location  X: 8368521-8371634
Chromosome . Primary Identifier  X Chromosome Location . Start  8368521
Chromosome Location . End  8371634 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F40B5.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018226 F40B5.2 F40B5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F40B5.2a F40B5.2a 1407   X: 8368539-8368726

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F40B5.2a.1 8368521 8371634 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon241952   206   X: 8368521-8368726 Caenorhabditis elegans
Exon241955   81   X: 8368850-8368930 Caenorhabditis elegans
Exon241956   137   X: 8369129-8369265 Caenorhabditis elegans
Exon241959   145   X: 8369657-8369801 Caenorhabditis elegans
Exon241962   127   X: 8369851-8369977 Caenorhabditis elegans
Exon241965   121   X: 8370474-8370594 Caenorhabditis elegans
Exon241968   111   X: 8370647-8370757 Caenorhabditis elegans
Exon241971   68   X: 8370801-8370868 Caenorhabditis elegans
Exon241974   305   X: 8370914-8371218 Caenorhabditis elegans
Exon241979   361   X: 8371274-8371634 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F40B5.2a.1 8368521 8371634 1

1 Sequence

Length
1662

1 Sequence Ontology Term

Identifier Name Description
transcript