WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48G8AL.11a.1 Sequence Name  Y48G8AL.11a.1
Length (nt)  2136   Chromosome Location  I: 1162880-1175809
Chromosome . Primary Identifier  I Chromosome Location . Start  1162880
Chromosome Location . End  1175809 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48G8AL.11a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001816 haf-6 Y48G8AL.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48G8AL.11a Y48G8AL.11a 2007   I: 1162953-1163042

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48G8AL.11a.1 1162880 1175809 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon2209   163   I: 1162880-1163042 Caenorhabditis elegans
Exon2213   218   I: 1164509-1164726 Caenorhabditis elegans
Exon2215   100   I: 1166226-1166325 Caenorhabditis elegans
Exon2217   206   I: 1166378-1166583 Caenorhabditis elegans
Exon2220   325   I: 1167652-1167976 Caenorhabditis elegans
Exon2222   244   I: 1169557-1169800 Caenorhabditis elegans
Exon2224   227   I: 1170670-1170896 Caenorhabditis elegans
Exon2227   288   I: 1173808-1174095 Caenorhabditis elegans
Exon2228   244   I: 1175384-1175627 Caenorhabditis elegans
Exon2229   121   I: 1175689-1175809 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48G8AL.11a.1 1162880 1175809 -1

1 Sequence

Length
2136

1 Sequence Ontology Term

Identifier Name Description
transcript