WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48G8AL.1a.1 Sequence Name  Y48G8AL.1a.1
Length (nt)  3290   Chromosome Location  I: 1211485-1254719
Chromosome . Primary Identifier  I Chromosome Location . Start  1211485
Chromosome Location . End  1254719 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48G8AL.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021685 herc-1 Y48G8AL.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48G8AL.1a Y48G8AL.1a 3060   I: 1211495-1211588

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48G8AL.1a.1 1211485 1254719 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon2259   104   I: 1211485-1211588 Caenorhabditis elegans
Exon2261   200   I: 1212574-1212773 Caenorhabditis elegans
Exon2263   193   I: 1213787-1213979 Caenorhabditis elegans
Exon2271   198   I: 1221047-1221244 Caenorhabditis elegans
Exon2273   151   I: 1222677-1222827 Caenorhabditis elegans
Exon2293   262   I: 1232373-1232634 Caenorhabditis elegans
Exon2296   107   I: 1233777-1233883 Caenorhabditis elegans
Exon2300   181   I: 1234493-1234673 Caenorhabditis elegans
Exon2304   196   I: 1236163-1236358 Caenorhabditis elegans
Exon2309   152   I: 1237954-1238105 Caenorhabditis elegans
Exon2314   201   I: 1239439-1239639 Caenorhabditis elegans
Exon2319   156   I: 1241100-1241255 Caenorhabditis elegans
Exon2324   89   I: 1242769-1242857 Caenorhabditis elegans
Exon2329   166   I: 1245227-1245392 Caenorhabditis elegans
Exon2334   228   I: 1247363-1247590 Caenorhabditis elegans
Exon2340   180   I: 1247779-1247958 Caenorhabditis elegans
Exon2347   183   I: 1253333-1253515 Caenorhabditis elegans
Exon2357   343   I: 1254377-1254719 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48G8AL.1a.1 1211485 1254719 1

1 Sequence

Length
3290

1 Sequence Ontology Term

Identifier Name Description
transcript