WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48G8AL.1a.2 Sequence Name  Y48G8AL.1a.2
Length (nt)  3283   Chromosome Location  I: 1211492-1254719
Chromosome . Primary Identifier  I Chromosome Location . Start  1211492
Chromosome Location . End  1254719 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48G8AL.1a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021685 herc-1 Y48G8AL.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48G8AL.1a Y48G8AL.1a 3060   I: 1211495-1211588

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48G8AL.1a.2 1211492 1254719 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon2260   97   I: 1211492-1211588 Caenorhabditis elegans
Exon2262   200   I: 1212574-1212773 Caenorhabditis elegans
Exon2264   193   I: 1213787-1213979 Caenorhabditis elegans
Exon2272   198   I: 1221047-1221244 Caenorhabditis elegans
Exon2274   151   I: 1222677-1222827 Caenorhabditis elegans
Exon2294   262   I: 1232373-1232634 Caenorhabditis elegans
Exon2297   107   I: 1233777-1233883 Caenorhabditis elegans
Exon2301   181   I: 1234493-1234673 Caenorhabditis elegans
Exon2305   196   I: 1236163-1236358 Caenorhabditis elegans
Exon2310   152   I: 1237954-1238105 Caenorhabditis elegans
Exon2315   201   I: 1239439-1239639 Caenorhabditis elegans
Exon2320   156   I: 1241100-1241255 Caenorhabditis elegans
Exon2325   89   I: 1242769-1242857 Caenorhabditis elegans
Exon2330   166   I: 1245227-1245392 Caenorhabditis elegans
Exon2335   228   I: 1247363-1247590 Caenorhabditis elegans
Exon2341   180   I: 1247779-1247958 Caenorhabditis elegans
Exon2348   183   I: 1253333-1253515 Caenorhabditis elegans
Exon2358   343   I: 1254377-1254719 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48G8AL.1a.2 1211492 1254719 1

1 Sequence

Length
3283

1 Sequence Ontology Term

Identifier Name Description
transcript