WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K09E2.4a.1 Sequence Name  K09E2.4a.1
Length (nt)  3784   Chromosome Location  X: 8660619-8671822
Chromosome . Primary Identifier  X Chromosome Location . Start  8660619
Chromosome Location . End  8671822 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K09E2.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004369 rig-1 K09E2.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K09E2.4a K09E2.4a 3252   X: 8661294-8661369

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:K09E2.4a.1 8660619 8671822 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon242598   49   X: 8660619-8660667 Caenorhabditis elegans
Exon242600   92   X: 8661278-8661369 Caenorhabditis elegans
Exon242602   187   X: 8661434-8661620 Caenorhabditis elegans
Exon242605   172   X: 8661675-8661846 Caenorhabditis elegans
Exon242608   130   X: 8662926-8663055 Caenorhabditis elegans
Exon242611   140   X: 8663102-8663241 Caenorhabditis elegans
Exon242614   426   X: 8663674-8664099 Caenorhabditis elegans
Exon242618   171   X: 8664287-8664457 Caenorhabditis elegans
Exon242621   205   X: 8664506-8664710 Caenorhabditis elegans
Exon242625   337   X: 8664762-8665098 Caenorhabditis elegans
Exon242629   223   X: 8665144-8665366 Caenorhabditis elegans
Exon242632   138   X: 8665412-8665549 Caenorhabditis elegans
Exon242637   136   X: 8666073-8666208 Caenorhabditis elegans
Exon242645   174   X: 8669291-8669464 Caenorhabditis elegans
Exon242652   128   X: 8670084-8670211 Caenorhabditis elegans
Exon242660   288   X: 8670324-8670611 Caenorhabditis elegans
Exon242668   152   X: 8670914-8671065 Caenorhabditis elegans
Exon242681   636   X: 8671187-8671822 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:K09E2.4a.1 8660619 8671822 1

1 Sequence

Length
3784

1 Sequence Ontology Term

Identifier Name Description
transcript