WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K09E2.4b.2 Sequence Name  K09E2.4b.2
Length (nt)  3651   Chromosome Location  X: 8661288-8671703
Chromosome . Primary Identifier  X Chromosome Location . Start  8661288
Chromosome Location . End  8671703 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K09E2.4b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004369 rig-1 K09E2.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K09E2.4b K09E2.4b 903   X: 8669299-8669464

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K09E2.4b.2 8661288 8671703 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon242601   82   X: 8661288-8661369 Caenorhabditis elegans
Exon242604   187   X: 8661434-8661620 Caenorhabditis elegans
Exon242607   172   X: 8661675-8661846 Caenorhabditis elegans
Exon242610   130   X: 8662926-8663055 Caenorhabditis elegans
Exon242613   140   X: 8663102-8663241 Caenorhabditis elegans
Exon242616   426   X: 8663674-8664099 Caenorhabditis elegans
Exon242620   171   X: 8664287-8664457 Caenorhabditis elegans
Exon242623   205   X: 8664506-8664710 Caenorhabditis elegans
Exon242628   605   X: 8664762-8665366 Caenorhabditis elegans
Exon242634   138   X: 8665412-8665549 Caenorhabditis elegans
Exon242639   136   X: 8666073-8666208 Caenorhabditis elegans
Exon242647   174   X: 8669291-8669464 Caenorhabditis elegans
Exon242655   128   X: 8670084-8670211 Caenorhabditis elegans
Exon242663   288   X: 8670324-8670611 Caenorhabditis elegans
Exon242671   152   X: 8670914-8671065 Caenorhabditis elegans
Exon242676   517   X: 8671187-8671703 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K09E2.4b.2 8661288 8671703 1

1 Sequence

Length
3651

1 Sequence Ontology Term

Identifier Name Description
transcript