WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:K09E2.2a.1 Sequence Name  K09E2.2a.1
Length (nt)  1936   Chromosome Location  X: 8673060-8681663
Chromosome . Primary Identifier  X Chromosome Location . Start  8673060
Chromosome Location . End  8681663 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K09E2.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019571 K09E2.2 K09E2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K09E2.2a K09E2.2a 1791   X: 8673130-8673154

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K09E2.2a.1 8673060 8681663 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon242684   95   X: 8673060-8673154 Caenorhabditis elegans
Exon242698   65   X: 8678147-8678211 Caenorhabditis elegans
Exon242700   141   X: 8678502-8678642 Caenorhabditis elegans
Exon242702   226   X: 8679104-8679329 Caenorhabditis elegans
Exon242704   126   X: 8679379-8679504 Caenorhabditis elegans
Exon242706   133   X: 8679547-8679679 Caenorhabditis elegans
Exon242708   76   X: 8679722-8679797 Caenorhabditis elegans
Exon242710   94   X: 8679840-8679933 Caenorhabditis elegans
Exon242712   132   X: 8679985-8680116 Caenorhabditis elegans
Exon242714   171   X: 8680161-8680331 Caenorhabditis elegans
Exon242716   164   X: 8680855-8681018 Caenorhabditis elegans
Exon242718   168   X: 8681069-8681236 Caenorhabditis elegans
Exon242720   123   X: 8681278-8681400 Caenorhabditis elegans
Exon242723   222   X: 8681442-8681663 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K09E2.2a.1 8673060 8681663 1

1 Sequence

Length
1936

1 Sequence Ontology Term

Identifier Name Description
transcript