WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK721.1.1 Sequence Name  ZK721.1.1
Length (nt)  2547   Chromosome Location  X: 8792160-8796110
Chromosome . Primary Identifier  X Chromosome Location . Start  8792160
Chromosome Location . End  8796110 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK721.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006477 chup-1 ZK721.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK721.1 ZK721.1 2271   X: 8792165-8792320

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:ZK721.1.1 8792160 8796110 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon242857   161   X: 8792160-8792320 Caenorhabditis elegans
Exon242858   99   X: 8792372-8792470 Caenorhabditis elegans
Exon242859   161   X: 8792615-8792775 Caenorhabditis elegans
Exon242860   145   X: 8792826-8792970 Caenorhabditis elegans
Exon242861   84   X: 8793018-8793101 Caenorhabditis elegans
Exon242862   88   X: 8793148-8793235 Caenorhabditis elegans
Exon242863   63   X: 8793283-8793345 Caenorhabditis elegans
Exon242864   138   X: 8793404-8793541 Caenorhabditis elegans
Exon242865   119   X: 8793693-8793811 Caenorhabditis elegans
Exon242866   74   X: 8793874-8793947 Caenorhabditis elegans
Exon242867   162   X: 8793991-8794152 Caenorhabditis elegans
Exon242868   103   X: 8794203-8794305 Caenorhabditis elegans
Exon242870   118   X: 8794386-8794503 Caenorhabditis elegans
Exon242871   137   X: 8794548-8794684 Caenorhabditis elegans
Exon242872   230   X: 8794740-8794969 Caenorhabditis elegans
Exon242873   106   X: 8795015-8795120 Caenorhabditis elegans
Exon242874   111   X: 8795174-8795284 Caenorhabditis elegans
Exon242875   448   X: 8795663-8796110 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:ZK721.1.1 8792160 8796110 1

1 Sequence

Length
2547

1 Sequence Ontology Term

Identifier Name Description
transcript