WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00006338 Gene Name  sup-33
Sequence Name  ? D1073.t1 Organism  Caenorhabditis elegans
Automated Description  Expressed in several structures, including body wall musculature; hermaphrodite gonad; hypodermis; intestine; and vulva. Biotype  SO:0001272
Genetic Position  X :0.462514 ±0.00255 Length (nt)  ? 72
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00006338

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:D1073.t1 D1073.t1 72   X: 8945160-8945231
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00012099

8 Allele

Public Name
gk964260
gk962707
gk963732
gk964126
gk961371
gk964112
tm4054
st389

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00006338 8945160 8945231 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes. DESeq2, FDR < 0.05, fold change > 2. WBPaper00065975:P-body_vs_oocyte_depleted
  Transcripts depleted in purified oocyte P bodies comparing to in the whole animal. DESeq2, FDR < 0.05, fold change > 2. WBPaper00065975:P-body_vs_WholeAnimal_depleted

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
(See also table 1)   Expr13221 Main visible expression: In L4: Very weak neuronal expression; strong expression in the hypodermis, muscles and vulva. In Adult: Stable expression throughout the transition to adulthood.  

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00006338 8945160 8945231 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
72

1 Sequence Ontology Term